Hi Sprior
When anything is replicated in woodwork the replicated object is never going to be identical to the original. However...
Just how accurate do the 20 mm holes need to be? If you drill 70 holes (I have forgotten how many there really are) then some will be plus error and some will be minus error. In theory there will be a little bit of cancellation of error. But, some errors can compound but the worst would be a doubling of the original error. If you look at a typical pair of holes North to South on the MFT and then a pair, East to West, at 90 degrees then the variation from square is likely to be small. Greater errors are introduced by the use of tall dogs (either Rail Dogs or Parf Dogs) or by operator error - such as putting lateral pressure on the saw or router during a cut.
So, in short, yes the replicated top is likely to be less accurate but not significantly so unless you are working for NASA.
What must never happen is the use of an MFT top COPY to be used as a pattern.
I hope this makes sense - it has past 6 pm here and 'the pubs are open' !
Peter