A long time ago I learned a trick from a befriended general contractor. He had a systainer (I think it was a T-Loc 5) with an inlay for caulking tubes. He had the inlay raised from the bottom with a few strips of plastic. In the systainer there was a few cm of water. He stored his caulking tubes upside down in the systainer, such that the tips of the tubes were under water. That way no oxygen will get to the contents of the tubes. It works like a charm. I have tubes with stuff like silicone and ms polymer stored like this that are like new, even though they have been open for more than a year.
I still intend to try something similar with my glue bottles, hoping that will solve any clogging issues. I almost exclusively use white glue (mostly D3, sometimes D4) and water has no real negative impact on the quality of those. It seems you should be able to get good results using this trick.