does it matter if the tool is packed the same exact way as the manufacturer puts it in there. The liners of the systainers make it pretty easy to figure out where to put each part/tool etc. Does any other tool put a picture on the case of where to put everything? As long as the cord isn't being bent, or anything is getting wrecked and the lid shuts, that's how it goes in. I don't just throw it in there but I don't see how hard it can be to put stuff back in a systainer.
I wish festool would use a better plastic liner for the tool systainers. That is just how the multimaster comes and it's annoying. All drill cases are molded to let you put the drill or tool back into the case each time. The thin black liner isn't going to last forever before it gets all busted up, for the cost of a festool, they can make a better liner for sure.