As always I am months late and many dollars short, but perhaps for the benefit of the next person...
My TSC-55 was sitting on the top of the Systainer with both 18V batteries in place for several months. When I went to top them up on the charger one charged up with no problem, the other would not take a charge at all and measured around 6V on a voltmeter, and the charge indicator would not light up.
I found nothing on the FOG but lots of videos of people resurrecting rechargeable batteries with a brief connection to a power supply or other battery. The idea seems to be that if the "dead" pack can't power the electronics that the charger uses to determine pack type, temperature, etc. the charger will not send power.
I had nothing to lose so I attached the Festool pack to a Milwaukee 18V pack for ~ 30 seconds with alligator clips. After disconnecting the Festool pack showed 18V, I put it on the charger and it charged normally! After it showed fully charged I took it off the charger and I've had it sitting on the bench for a couple of weeks since then, checking it once in a while and still shows 20.54V.
So the good news is that my Festool 18V pack seems to have recovered – I have tried it on the saw but not used it extensively since the resurrection. But I am still wondering about the discharge, only on one of the two batteries – could there be some sort of phantom power draw, keep-alive, heartbeat or something going on with the TSC-55? I am not curious enough to dismantle anything or otherwise investigate, from now on I will just store the saw with batteries removed, probably a best practice anyway.