Maybe someone has a better method worked out, but when I've had to do this in the past, I just guesstimated, practicing on scrap until it lined up. The problem is obviously that you can't reference off the same edge since you can't set the fence to do acute angles. So one will be done on the inside edge, and the other on the outside. But it is possible to get it right. I would do one set of sides first, then work out the fence height for the corresponding joints on the other pair of parallel boards. There's a line on the side of the Domino showing the center of the plunge, which can get you approximately close on the initial set up, and then you can tweak it from there.
Last time I had to do this was on a Donald Judd inspired desk made out of plywood, where the dominoes run vertically up the joint between the angled cross piece and the sides. Clamping it was kind of pain, but it worked.
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