This long post may appear as a repetition of previous posts in this thread, but I decided to write it down
  as a summary for myself, as a reference section to look at for new MFT users, and for all of us to trigger
  further thoughts along this line.
  I would have loved to post pictures of all of this, but I just discovered that my camera went to England with
  my wife visiting her mother.... I'll post them later. Sorry for that.
  Hope this helps ...
 1) What now seems clear is to how to easily make accurate 90 or 45 degree cuts, for workpieces that are the size
  of the MFT
  a) align the guide rail with the MFT holes:
     - pick up 2 dogs of your choice, e.g. the fixed part of Festool quick clamp, or 50mm long sections
       from the 20mm PVC pipe used by electricians, and plug them in vertical holes near where
       you want to install the guide rail.
     - slide the rail brackets on the MFT side rails so that guide rail left side rests against the vertical dogs.
       For new MFT users: make sure that rail firmly sits on the pin located on bracket near you,
       and  it does not wobble.
  b) setup a 90 or 45 degree fence
 - plug two dogs in horizontal holes for 90 degree cuts, and diagonal holes for 45 degree cuts.
    If fence is thin and long, more than two dogs can be used. It is recommended to secure/clamp
    the fence using at least one Festool horizontal clamp  or any appropriate device.
    You may choose not to install a fence, but simply rest the workpiece against  the dogs.
- now fence (or dogs) and rail are set at a perfect 90 or 45 degree angle. Workpiece can be installed
  and secured as appropriate. The stop which slides on the MFT fence can be used to secure the workpiece
  and to make repetitive identical cuts.
- This specially applies to workpieces thinner than the MFT fence, or of a width close to or narrower  than
   the width of the guide rail, since now you can rest the workpiece itself against a fence made from some
   appropriate thin piece of material.
2 ) When workpiece is bigger than the MFT, two MFTs may be joined. The hole technique can be used,
      particularly to install a long fence extending across the two MFTs, using as many dogs as needed
      to keep it straight. But make sure the hole patterns of the two tables are well aligned.
3) What is not yet totally clear is how to make best use of  the parallelogram idea
- Using the rail as one side of the parallelogram is not convenient since rail must  rest on the workpiece to be
   cut, while the opposite side of the parallelogram does not as a result of plugging into the holes. This is
   definitely a problem for handling a thick workpiece
- The likely most appropriate use of a parallelogram might be to make cuts on the right side of the blade,
   typically to cut narrow strips. In that case rail is resting on the workpiece to be cut, and the parallelogram
   is used as a fence that rests flat on the MFT, one side against vertical holes and the opposite
   side against the piece to be cut.
4) Other related threads/tips that can benefit from the hole aligning technique
-
http://festoolownersgroup.com/index.php?topic=1491.0 (a jig to position the rail)
-
http://festoolownersgroup.com/index.php?topic=496.0  (MFT setup tips)
-
http://www.festoolusa.com/Web_files/Getting_the_most_from_the_MFT_multifunction_table.pdf
-
http://festoolownersgroup.com/index.php?topic=1585.0 (using Incra track with the MFT)
-
http://festoolownersgroup.com/index.php?topic=97.30 (Notes on the MFS)
I'm sure this list is not complete. Please feel free to point out any missing items you may know